Auxiliary tools

Standalone utilities. Full flag lists: habit <command> --help and Auxiliary commands.

ICC (feature reproducibility)

habit icc --config config/auxiliary/config_icc_demo.yaml

Configuration: Auxiliary Tools and Data Configuration.

Test-retest habitat mapping

habit retest --config config/auxiliary/config_test_retest.yaml

Configuration: Auxiliary Tools and Data Configuration.

DICOM metadata export

habit dicom-info -i ./demo_data/dicom -o info.csv

No YAML config; all options are CLI flags.

Merge tables

habit merge-csv file1.csv file2.csv -o merged.csv --index-col PatientID

Dice between mask batches

habit dice --input1 dir1 --input2 dir2 --output dice_results.csv