Auxiliary tools

Copy-paste demos. Flags: habit <cmd> --help.

habit icc --config config/auxiliary/config_icc_demo.yaml

For in-memory habitat label alignment after independent clustering, use align_habitat_map() for two maps of the same voxels and align_habitat_maps_to_prototypes() across subjects (see Matching habitat labels across fits and subjects).

habit dicom-info -i demo_data/dicom -o demo_data/results/htg_dicom_info.csv --one-file-per-folder
habit merge-csv demo_data/ml_data/breast_cancer_dataset.csv demo_data/ml_data/clinical_feature.csv -o demo_data/results/htg_merged.csv --index-col subject_id
habit dice --input1 demo_data/preprocessed --input2 demo_data/preprocessed --output demo_data/results/htg_dice_results.csv

Dice is a table; the examples gallery also draws the compared ROI:

Pairwise Dice from dice() (Cohort plugins and auxiliary tools).