habit.habitat_features: quantify habitats
Built-in habitat feature extractors and their registry.
User guide: Habitat Guide Volume and fractions · Multiregional spatial interaction (MSI) · Intratumoral heterogeneity (ITH) · Habitat domain API. Component names: Habitat Spec component catalog.
Volume, MSI, ITH, graph, non-radiomics, and optional PyRadiomics families.
Classes
Compute habitat-level features for one subject. |
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Voxel counts and volume fractions of every habitat for one subject. |
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ITH score for one subject's habitat map. |
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Multiregional spatial interaction features of one subject's habitat map. |
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Graph-topology features of one subject's habitat map. |
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Basic spatial features of one subject's habitat map. |
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PyRadiomics features of the raw image(s) within each habitat label. |
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PyRadiomics features of the habitat map treated as the image itself. |
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PyRadiomics features of the raw image(s) within the whole ROI. |
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Long table of one value per subject x habitat x feature. |
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Descriptive and (when n>=2) inferential habitat-vs-habitat contrast. |
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Evaluate a habitat-level feature tree into one |
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Name-to-implementation registry for habitat feature extractors. |
Functions
Melt a wide |
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Contrast features across habitats for one subject or a cohort. |
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Build one habitat-level node: a leaf extractor or a combiner tree. |