Command reference

Command	Purpose	Guide
habit preprocess	Image preprocessing	Preprocessing
habit sort-dicom	DICOM sort / rename	Preprocessing · DICOM Sort Configuration
habit get-habitat	Habitat segmentation	Habitat segmentation
habit extract	Feature extraction	Feature extraction
habit model / habit cv	ML / K-fold	Machine learning
habit compare	Model comparison	Model comparison · Model Comparison Configuration
habit gui	Web GUI (under development)	Web GUI (under development)
habit radiomics	Traditional radiomics	Traditional radiomics · Traditional Radiomics Configuration
habit dicom-info / icc / retest / merge-csv / dice	Utilities	Auxiliary tools · Auxiliary commands

Global flags: --help , --version . --config / -c applies to pipeline commands that take a YAML (not dice, dicom-info, merge-csv, gui). --debug and --resume apply to habit get-habitat only.

Templates: config/ · fields: Configuration Reference .