Command reference

Every command is a thin shell over the Python API. YAML fields: CLI and YAML. Habitat maps and extract walk-throughs are Python-first in the Guide.

Command	Purpose	Guide
habit preprocess	Image preprocessing	Preprocessing Configuration
habit sort-dicom	DICOM sort / rename	DICOM Sort Configuration
habit get-habitat	Habitat maps	Recipes
habit view	Overlay habitat on image (paths, no YAML)	Figures and methods
habit extract	Habitat features	Habitat features
habit radiomics	Whole-ROI radiomics	Traditional Radiomics Configuration
habit check-config	Validate YAML	Quickstart: run the demo (YAML + CLI)
habit copy-demo-config	Materialize bundled demo config/ into a work dir	Quickstart: run the demo (YAML + CLI)
habit fetch-demo	Download the official preprocessed pack once and print its layout	Load data
habit migrate-config	Older YAML → current document	Spec, RunPolicy, and YAML isomorphism
habit list-components	List plugins	Plugin introspection API
habit icc / dicom-info / merge-csv / dice	Utilities	Auxiliary Tools and Data Configuration

Help: habit --help, habit <cmd> --help. Demo templates: habit copy-demo-config (or from habit.utils.demo_config_utils import copy_demo_config). Imaging pack: habit fetch-demo (or from habit.datasets import fetch_demo).