plot_simpleitk_ingest

Note

This page is a reference documentation. It only explains the function signature, and not how to use it. Please refer to the Habitat Guide and Python API guide (v2.0) for usage.

plot_simpleitk_ingest(image: object, labels: object, *, title: str = 'From SimpleITK to habitats', panel_title: str = 'Habitats', crop_pad: int = 8) → Figure[source]

Diagram for the SimpleITK route: voxel-cube badge -> habitat overlay.

Parameters:

  • image – Anatomy volume (array or ImageVolume) of one subject.

  • labels – Habitat label map (array or HabitatMap) on the same grid.

  • title – Figure title (ASCII-sanitised).

  • panel_title – Title of the cropped data panel.

  • crop_pad – Context voxels around the habitat bounding box (default 8).

Returns:

A matplotlib Figure with the stylised SimpleITK badge on the left and the cropped habitat overlay on the right.

Examples using habit.viz.plot_simpleitk_ingest

Load from SimpleITK

Load from SimpleITK