Habitat analysis
This page is a bookmark. Strategy is inferred from stages, not from the function name:
Strategy |
Stages |
Use when |
|---|---|---|
two_step |
|
Shared cohort definition; supervoxels first (typical paper pipeline). Two-step habitat analysis |
direct_pooling |
|
Shared cohort definition; cluster voxels (no supervoxels). Direct-pooling habitat analysis |
one_step |
neither |
Habitats defined per subject. Integer ids are permuted — align them before comparing patients (Apply a saved model). One-step habitat analysis |
Atomic embedding (op(subject), no recipe):
Atomic operators.
First map: Quickstart: Python API (Python) or Quickstart: run the demo (YAML + CLI) (CLI). Data in: Load data.