Habitat segmentation

habit get-habitat --config config/habitat/config_habitat_two_step.yaml

Other strategies (swap config file):

  • One-step: config/habitat/config_habitat_one_step_raw_concat_train.yaml

  • Direct pooling: config/habitat/config_habitat_direct_pooling.yaml

Options: --mode train|predict , --resume .

Output: *_habitats.nrrd ; overlay in ITK-SNAP / 3D Slicer.

Strategy choice: Habitats and clustering

Configuration: Habitat Segmentation Configuration